11 Muffin Recipes Meant for Freezing Half the Batch for Later

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Making muffins is even more useful when half the batch can wait for another morning. These 11 recipes include chocolate, pumpkin, fruit, and savory cheese options, along with a lemon-blueberry muffin-cookie variation. Some can be wrapped and frozen individually, while cream cheese fillings and marshmallow toppings deserve a little more care when thawing. Bake what you want today, then store the extra portions once they have cooled so breakfast or a snack is easier another day.

S’mores Muffins

Close-up of chocolate chip muffins with crumb topping in paper liners, cooling on a wire rack.
S’mores Muffins. Photo credit: Your Perfect Recipes.

Toasted marshmallow tops give S’mores Muffins the campfire finish that makes a muffin feel like a treat. Mini marshmallows, semisweet chocolate, and a buttery graham cracker crumble fill the 12-muffin batch, which takes 30 minutes. Enjoy a few while the chocolate is warm, then cool and freeze the extras separately before bagging them. The topping may soften in storage, but a brief warm-up brings back some of its just-baked character for another snack.
Get the Recipe: S’mores Muffins

Rhubarb Muffins

Close-up of three muffins with crumbly streusel topping, each wrapped in white parchment paper, arranged on a wooden surface.
Rhubarb Muffins. Photo credit: My Reliable Recipes.

A crisp cinnamon-sugar top makes Rhubarb Muffins a welcome change from the usual chocolate or banana batch. Diced rhubarb, brown sugar, buttermilk, and walnuts go into a recipe that makes 16 in 35 minutes. That larger yield leaves plenty to put away after breakfast. Cool the muffins completely before wrapping the extras individually, and save the second half for a morning when a tart fruit bake sounds good but mixing batter does not.
Get the Recipe: Rhubarb Muffins

Pumpkin Muffins

A stack of pumpkin muffins in paper liners is arranged on a light surface, with small decorative pumpkins in the background.
Pumpkin Muffins. Photo credit: My Reliable Recipes.

Warm spices and a soft crumb make Pumpkin Muffins an easy bake to pull from the freezer when the morning turns cool. Pumpkin puree, cinnamon, brown sugar, and buttermilk give the 12-muffin batch its familiar fall flavor. The recipe takes 45 minutes, but the extra muffins can be portioned after cooling rather than eaten all at once. Freeze them in individual wraps so you can take out only what you need with coffee or breakfast.
Get the Recipe: Pumpkin Muffins

Jalapeño Honey Cornbread Muffins

Cornbread muffins topped with sliced jalapeños in white paper liners, arranged on a wooden surface.
Jalapeño Honey Cornbread Muffins. Photo credit: Your Perfect Recipes.

A savory break from the sweeter bakes, Jalapeño Honey Cornbread Muffins combine cornmeal, honey, jalapeños, corn, and Cheddar in a 12-muffin batch. They take 32 minutes and work beside eggs, soup, or chili, so freezing extra portions gives you more than a breakfast backup. Cool them before packing and reheat only the number needed for dinner. Their sweet heat makes a small side feel more interesting without making another pan of cornbread.
Get the Recipe: Jalapeño Honey Cornbread Muffins

Lemon and Blueberry Muffin Cookies

Close up image of lemon blueberry muffin cookies on a wooden board.
Lemon and Blueberry Muffin Cookies. Photo credit: Hungry Cooks Kitchen.

Bright lemon flavor and a streusel-style top set Lemon and Blueberry Muffin Cookies apart from the traditional muffins in this collection. Fresh blueberries, lemon zest, lemon juice, and brown sugar give the soft cookies their fruit-filled character. The recipe makes 13 in 45 minutes, a convenient number for eating some now and setting aside the rest. Freeze the cooled cookies in a protected container, then thaw a few when an afternoon snack calls for something sweet.
Get the Recipe: Lemon and Blueberry Muffin Cookies

Pumpkin Spiced Muffins

A stack of pumpkin spiced muffins on a plate.
Pumpkin Spiced Muffins. Photo credit: Splash of Taste.

The smell of warm spice makes Pumpkin Spiced Muffins an inviting breakfast even when they were baked on a different day. Pumpkin, cinnamon, nutmeg, ginger, cloves, butter, and brown sugar make a batch of 12 in 35 minutes. Set a few out with coffee, then wrap the cooled remainder for the freezer. Thaw one when you want a simple fall breakfast without turning on the oven or making another full batch from scratch.
Get the Recipe: Pumpkin Spiced Muffins

Blueberry Cheesecake Muffins

A plate of blueberry muffins with crumb topping, arranged in a pile.
Blueberry Cheesecake Muffins. Photo credit: Your Perfect Recipes.

A sweet cream cheese center makes Blueberry Cheesecake Muffins more like a bakery treat than an ordinary fruit muffin. Fresh blueberries, Greek yogurt, milk, and a cream cheese filling come together in 40 minutes for 12 servings. Keep some chilled to eat soon, and individually wrap the cooled extras for freezing. Thaw the frozen muffins in the refrigerator because of the dairy filling, then serve one with coffee or fruit on a quieter morning.
Get the Recipe: Blueberry Cheesecake Muffins

Chocolate Chip Muffins

Close-up of three chocolate muffins in brown paper wrappers, topped with chocolate chips, with part of a bowl of chocolate chips visible in the background.
Chocolate Chip Muffins. Photo credit: My Reliable Recipes.

Rich cocoa and chocolate chips give Chocolate Chip Muffins a deeper chocolate flavor than a plain vanilla muffin with a few chips mixed in. Brown sugar and buttermilk help round out the batter, which makes 12 muffins in 35 minutes. Eat a couple fresh, then freeze the cooled remainder in portions that are easy to grab. A thawed muffin works for a quick snack with milk when there is no time to bake.
Get the Recipe: Chocolate Chip Muffins

Copycat Starbucks Pumpkin Cream Cheese Muffins

Close-up of a muffin with a bite taken out, topped with cream and pumpkin seeds.
Copycat Starbucks Pumpkin Cream Cheese Muffins. Photo credit: Pocket Friendly Recipes.

A swirl of sweet cream cheese makes Copycat Starbucks Pumpkin Cream Cheese Muffins recognizable before the first bite. Pumpkin puree, cinnamon, nutmeg, brown sugar, and a creamy filling make 12 muffins in 35 minutes. Enjoy part of the batch fresh and freeze the rest once completely cooled, using a container that protects the filled tops. Thaw the extras before serving when you want a coffee-shop-style breakfast without stopping to buy one.
Get the Recipe: Copycat Starbucks Pumpkin Cream Cheese Muffins

Zucchini Muffins

Close-up of several zucchini muffins on a plate, with one muffin split in half to show its moist, textured interior.
Zucchini Muffins. Photo credit: Splash of Taste.

Cheese and grated vegetables turn Zucchini Muffins into the savory option worth saving for another meal. Emmental, zucchini, onion, eggs, and black pepper make a small batch of 6 in 27 minutes. Set aside three after cooling if you want to freeze exactly half. They work with eggs at breakfast or alongside soup at lunch, making the frozen portions useful when you need something other than another sweet muffin.
Get the Recipe: Zucchini Muffins

Banana Chocolate Chip Muffins

Close-up of a freshly baked muffin topped with chocolate chips and oats, wrapped in a paper liner. A blurred drink and other baked goods are visible in the background.
Banana Chocolate Chip Muffins. Photo credit: Splash of Taste.

A soft banana crumb with pockets of chocolate gives Banana Chocolate Chip Muffins a familiar breakfast-and-snack appeal. Ripe bananas, Greek yogurt, brown sugar, vanilla, and chocolate chips go into a batch of 6 that takes 30 minutes. Save three for today and wrap the other three once cool, so the freezer holds individual portions instead of a full container. Thaw one for breakfast with fruit or enjoy it later with milk.
Get the Recipe: Banana Chocolate Chip Muffins

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